[Biojava-l] location of biojava.jar on a linux system

[Rahul Karnik]

>>java -classpath . -jar MotifSearch.jar

"-cp ." only works with unzipped jar files. In your case, I would use:

java -cp xerces.jar:biojava.jar:<otherjarshere> -jar MotifSearch.jar

Hope that helps,
Rahul