[Biojava-l] Restriction mapping for the whole chromosome sequence

[mark.schreiber at novartis.com]

Have you tried setting the -Xmx option of your JVM?





Ilhami Visne <ilhami.visne at gmail.com>
Sent by: biojava-l-bounces at portal.open-bio.org
12/12/2005 05:57 AM

 
        To:     biojava-l at biojava.org
        cc:     (bcc: Mark Schreiber/GP/Novartis)
        Subject:        [Biojava-l] Restriction mapping for the whole chromosome sequence


hi,

i want to do restricting mapping for the whole chromosome sequence, e.g.
chr1, ~240MB. it goes for some enzyme, like MsiI, perfect but for an 
another
enzyme(MseI), i achieve an OutOfMemoryError. Why? What is the difference?

thanx in advance

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