[Biojava-l] Restriction mapping for the whole chromosome sequence

[Ilhami Visne]

hi,

i want to do restricting mapping for the whole chromosome sequence, e.g.
chr1, ~240MB. it goes for some enzyme, like MsiI, perfect but for an another
enzyme(MseI), i achieve an OutOfMemoryError. Why? What is the difference?

thanx in advance