[Biojava-l] cvs downlod install

Richard HOLLAND hollandr at gis.a-star.edu.sg
Fri Dec 2 01:24:27 EST 2005


Your problem lies here:

> when i use in the folder C:\biojava\biojava-live\:
> (windows)
>   cd demos
>   javac seq\TestEmbl.java
> i obtain
> $ javac seq\TestEmbl.java
> error: cannot read: seqTestEmbl.java
> 1 error

Note that the java file has not been compiled. Hence when you later try
to run the compiled class, it's not there, so you get a NoClassDefFound
exception.

I suspect that either you accidentally left out the backslash (\)
between "seq" and "TestEmbl.java" when you typed the javac command, or
that Windows is misinterpreting the backslash. Try replacing it with a
double backslash (\\) or a forward slash (/).

cheers,
Richard

Richard Holland
Bioinformatics Specialist
GIS extension 8199
---------------------------------------------
This email is confidential and may be privileged. If you are not the
intended recipient, please delete it and notify us immediately. Please
do not copy or use it for any purpose, or disclose its content to any
other person. Thank you.
---------------------------------------------


> -----Original Message-----
> From: biojava-l-bounces at portal.open-bio.org 
> [mailto:biojava-l-bounces at portal.open-bio.org] On Behalf Of 
> D.Enrique ESCOBAR ESPINOZA
> Sent: Friday, December 02, 2005 1:54 PM
> To: biojava-l at biojava.org
> Subject: [Biojava-l] cvs downlod install
> 
> 
> i put the files:
>     *  bytecode-0.92.jar
>     * commons-cli.jar
>     * commons-collections-2.1.jar
>     * commons-dbcp-1.1.jar
>     * commons-pool-1.1.jar
> in my biojava directory: C:\biojava
> is set my classpath
> set CLASSPATH C:\biojava\biojava.jar;
> C:\biojava\bytecode-0.92.jar;
> C:\biojava\commons-cli.jar;
> C:\biojava\commons-collections-2.1.jar;
> C:\biojava\commons-dbcp-1.1.jar;
> C:\biojava\commons-pool-1.1.jar;.
> with cvs download:
> all biojava-live files where put into
> C:\biojava\biojava-live\
> so i m supposed to move these files up to
> C:\biojava\
> directory?
> **
> when i use in the folder C:\biojava\biojava-live\:
> (windows)
>   cd demos
>   javac seq\TestEmbl.java
> i obtain
> $ javac seq\TestEmbl.java
> error: cannot read: seqTestEmbl.java
> 1 error
> i obtain
>   java seq.TestEmbl seq\AL121903.embl
> i have:
> $ java seq.TestEmbl seq\AL121903.embl
> Exception in thread "main" java.lang.NoClassDefFoundError:
> seq/TestEmbl
> 
> --------------------------------------------------
> D.Enrique ESCOBAR ESPINOZA (B.Sc.) 
> http://adn.bioinfo.uqam.ca/~escd07097301/
> http://spaces.msn.com/members/escobarebio/
> ICQ#: 201778618
> -------------------------------------------------
> Tel:  (514) 523-8398
> Montreal QC Canada
> 
> 
> 		
> __________________________________ 
> Start your day with Yahoo! - Make it your home page! 
> http://www.yahoo.com/r/hs
> _______________________________________________
> Biojava-l mailing list  -  Biojava-l at biojava.org
> http://biojava.org/mailman/listinfo/biojava-l
> 



More information about the Biojava-l mailing list