[Biojava-l] Locations in centiMorgans

[VERHOEF Frans]

Hi everyone,

 

I have a bunch of SNPs of which I do have their chromosomal location. I
do however need their location in centiMorgans. 

 

Currently I am fetching for every gene two known nearby centiMorgan
locations (using NCBI's genome viewer) and interpolate to derive the
centiMorgan location for every SNP inside the gene, using a small script
I wrote.

 

This method is a bit time consuming and needs to be automated in the
near future. Does anyone of you have any idea of how to go about this?
Is there a way to fit biojava in? 

 

Thanks,

 

Frans Verhoef

Bioinformatics Specialist

Genome Institute of Singapore

60 Biopolis Street, #02-01 Genome, Singapore 138672

Tel: +65 6478 8000

DID: +65 6478 8060

HP: +65 9848 4325

Email: verhoeff2 at gis.a-star.edu.sg

 

 

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