[Biojava-l] reading sequence files

[Clemens Steegborn]

Hi,

I used the bj_in_anger code when I had the sequence I/O problems; and
I found the reason: I used JDK 1.3; worked fine when I switched to 1.4;
Sorry, mea culpa

Clemens

> Hi -
> 
> Could you post your code and an example GenBank or EMBL accession as well 
> so we can get an idea of what might be going wrong? Alternatively you 
> might want to look at http://www.biojava.org/docs/bj_in_anger/  for some 
> examples of sequence I/O
> 
> - Mark
> 
> Mark Schreiber
> Principal Scientist (Bioinformatics)
> 
> Novartis Institute for Tropical Diseases (NITD)
> 10 Biopolis Road
> #05-01 Chromos
> Singapore 138670
> www.nitd.novartis.com
> 
> phone +65 6722 2973
> fax  +65 6722 2910
> 
> 
> 
> 
> 
> "Clemens Steegborn" <Clemens_Steegborn at gmx.de>
> Sent by: biojava-l-bounces at portal.open-bio.org
> 06/08/2004 05:28 AM
> 
>  
>         To:     biojava-l at biojava.org
>         cc: 
>         Subject:        [Biojava-l] reading sequence files
> 
> 
> 
> Hi,
> 
> I have problems to extract sequence data from files (Genbank or EMBL) 
> using
> BioJava 1.3; I can get sequence names or annotations, but when I try to 
> get
> the sequence itself, I get a null pointer exception! Can anybody help?
> Thanks ..
> 
> Clemens
> 
> -- 
> -------------------------------
> Clemens Steegborn, Ph.D.
> Dept. Biochemistry
> Cornell Medical School
> 1300 York Avenue
> New York, NY 10021
> 
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> 
> 

-- 
-------------------------------
Clemens Steegborn, Ph.D.
Dept. Biochemistry
Cornell Medical School
1300 York Avenue
New York, NY 10021

"Sie haben neue Mails!" - Die GMX Toolbar informiert Sie beim Surfen!
Jetzt aktivieren unter http://www.gmx.net/info