[Biojava-l] reading sequence files

mark.schreiber at group.novartis.com mark.schreiber at group.novartis.com
Mon Jun 7 21:25:24 EDT 2004

Hi -

Could you post your code and an example GenBank or EMBL accession as well 
so we can get an idea of what might be going wrong? Alternatively you 
might want to look at http://www.biojava.org/docs/bj_in_anger/  for some 
examples of sequence I/O

- Mark

Mark Schreiber
Principal Scientist (Bioinformatics)

Novartis Institute for Tropical Diseases (NITD)
10 Biopolis Road
#05-01 Chromos
Singapore 138670

phone +65 6722 2973
fax  +65 6722 2910

"Clemens Steegborn" <Clemens_Steegborn at gmx.de>
Sent by: biojava-l-bounces at portal.open-bio.org
06/08/2004 05:28 AM

        To:     biojava-l at biojava.org
        Subject:        [Biojava-l] reading sequence files


I have problems to extract sequence data from files (Genbank or EMBL) 
BioJava 1.3; I can get sequence names or annotations, but when I try to 
the sequence itself, I get a null pointer exception! Can anybody help?
Thanks ..


Clemens Steegborn, Ph.D.
Dept. Biochemistry
Cornell Medical School
1300 York Avenue
New York, NY 10021

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