[Biojava-l] reading sequence files

[mark.schreiber at group.novartis.com]

Hi -

Could you post your code and an example GenBank or EMBL accession as well 
so we can get an idea of what might be going wrong? Alternatively you 
might want to look at http://www.biojava.org/docs/bj_in_anger/  for some 
examples of sequence I/O

- Mark

Mark Schreiber
Principal Scientist (Bioinformatics)

Novartis Institute for Tropical Diseases (NITD)
10 Biopolis Road
#05-01 Chromos
Singapore 138670
www.nitd.novartis.com

phone +65 6722 2973
fax  +65 6722 2910





"Clemens Steegborn" <Clemens_Steegborn at gmx.de>
Sent by: biojava-l-bounces at portal.open-bio.org
06/08/2004 05:28 AM

 
        To:     biojava-l at biojava.org
        cc: 
        Subject:        [Biojava-l] reading sequence files



Hi,

I have problems to extract sequence data from files (Genbank or EMBL) 
using
BioJava 1.3; I can get sequence names or annotations, but when I try to 
get
the sequence itself, I get a null pointer exception! Can anybody help?
Thanks ..

Clemens

-- 
-------------------------------
Clemens Steegborn, Ph.D.
Dept. Biochemistry
Cornell Medical School
1300 York Avenue
New York, NY 10021

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