[Biojava-l] Recent additions to BJIA

[mark.schreiber at group.novartis.com]

Hello all -

There have been some recent updates to BioJava in Anger. There is a link 
under 'Publications' that will search the new Google Scholar site for 
references to BioJava. 

There is a new tutorial on how to make a custom SearchContentHandler 
(http://www.biojava.org/docs/bj_in_anger/blastecho.htm) which shows which 
part of the blast parsing process are emmitted as what type of events and 
also gives some clues on how you would make a parser that can handle very 
large files or a parser that only cares about a small subset of 
information.

Finally there is a tutorial on how to set up Biojava and BioSQL using 
Oracle 
(http://www.biojava.org/docs/bj_in_anger/bj_and_bsql_oracle_howto.htm). 
Credit for this page goes to Richard Holland from the Genome Institute in 
Singapore.

There will probably be a few more additions over the next few days.

Enjoy...

Mark Schreiber
Principal Scientist (Bioinformatics)

Novartis Institute for Tropical Diseases (NITD)
10 Biopolis Road
#05-01 Chromos
Singapore 138670
www.nitd.novartis.com

phone +65 6722 2973
fax  +65 6722 2910