[Biojava-l] how do you run a similarity search through biojavaclasses?

[Schreiber, Mark]

Hi -
 
The weight matrices and DP examples from http://www.biojava.org/docs/bj_in_anger/index.htm might be useful.
 
- Mark
 

	-----Original Message----- 
	From: Alberto Ambesi [mailto:ambesi at tigem.it] 
	Sent: Tue 16/09/2003 8:37 a.m. 
	To: biojava-l at biojava.org 
	Cc: 
	Subject: [Biojava-l] how do you run a similarity search through biojavaclasses?
	
	

	I need to find the best similarity match of a query sequence against
	bigger sequence (say, a chromosome region of 100 kb). what I need as
	output is the identity % of the match and the position (start/end).
	please any suggestions or sample code are apreciated.
	Thank you,
	Alberto Ambesi
	
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