[Biojava-l] Parse error with negative strand CDS

[Criscuolo, Fred]

Hi,
I am using BioJava 1.3.0 to process a GenBank file that has a CDS on the
negative strand. I am using the SeqIOTools.readGenbank(BufferedReader)
method to parse the file. I get the following error for any CDS on the
negative strand:

  This line could not be parsed:  CDS            complement(518..1597)

The GenBank files I'm working with are produced by the VectorNTI
application. I'm using Java 1.4.2.  I've searched the biojava mailing list
but have not seen a reference to this particular problem. Any idea what's
wrong? Thanks.
Fred

Fred Criscuolo
Research Informatics - Pfizer, Inc.
858.622.7307 



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