[Biojava-l] problem parsing genbank files
claude.pasquier at unice.fr
Fri Oct 24 06:54:34 EDT 2003
I have a problem during the parsing of some genbank file concerning the
handling of 'LOCUS' annotation.
The line below, for example, found in the Caenorhabditis_briggsae.0.dat file
(downloaded from ensembl site) is not correctly read by the parser :
LOCUS ENS:cb25.fpc3857.1015654-1035120 19467 bp DNA HTG 24-MAR-2003
It seems that the problem has something to do with the length of the line :
- when I add a character, this raises an exception "line too short" ?!
- if I delete a char, it's OK !
Thanks for your help,
CNRS UMR 6543. Institute of Signaling, Developmental Biology and Cancer
Centre de Biochimie, Faculté des Sciences, 06108 Nice cedex 2
Tel: +33 4 92 07 69 47
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