[Biojava-l] How to combine multiple Sequence objects into a singleSequence object?

[Daniel Kiviet]

Thanks for your quick respons Mark!

I manage to get all the required sequences, but am having problems
combining them (together with their features). Do you maybe know where I
could find some example code of such 'joining' with the Edit functions?

Cheers,
Daniel


> Hi -
>
> We get asked this a lot. Unfortunately there isn't an easy solution.
> If you have access to all of the files referenced in the main EMBL
> file then you could write a simple program to retrieve and open them
> all and then use something like Edit functions to join them together.
>
> - Mark
>
>
> 	-----Original Message-----
> 	From: Daniel Kiviet [mailto:kiviet at science.uva.nl]
> 	Sent: Sat 18/10/2003 4:21 a.m.
> 	To: biojava-l at biojava.org
> 	Cc:
> 	Subject: [Biojava-l] How to combine multiple Sequence objects into a
> singleSequence object?

>
>
> 	Hello,
>
> 	I'm trying to create a genome viewer by importing EMBL files using
> the
> SeqIOTools.readEmbl function. This gives me an iterator over the
> sequences in the embl file. The embl files I am using are split up in
> several sections within the embl file ('section 1 of 109 of the
> complete
 genome' etc).
>
> 	Does anyone know how to combine multiple Sequence objects into a
> single
 Sequence object?
>
> 	Thanks & best regards,
> 	Daniel Kiviet
>
>
>
> 	--------------------
> 	Daniel Kiviet
> 	ANU, Canberra ACT , Australia
>
>
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>
>
>
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--------------------
Daniel Kiviet
Fenner Hall, ANU
GPO Box 10
Canberra ACT 2601
Australia

tel. +61 2 612 59224
mob. +61 4 036 86302