[Biojava-l] ontology exception, addSequence & BioSQLSequenceD B

[Len Trigg]

Simon Foote wrote:
> The new code does indeed break existing BioSQL databases.  As far as I 
> can tell it relates to the changes in the core_ontology.
> To test this, I found that within my existing databases, the 
> core_ontology terms are never used, so I removed all the core_ontology 
> terms from the database.  I then re-ran one of my DB programs, so the 
> core ontology would be re-built, but it fails with this error. 

So, is this the recommended upgrade method? (I'll have to check whether 
or not the core_ontology terms are used in my db's, but I don't think 
they are)


Cheers,
Len.