[Biojava-l] Problems compiling biojava-live

[Sylvain Foisy]

Hi to all,

I have been having problems compiling biojava-live for that past few days
now. My ant output is like this:

compile:
    [javac] Compiling 48 source files to
/Users/foisys/biojava-live/ant-build/classes/main
    [javac] 
/Users/foisys/biojava-live/ant-build/src/main/org/biojava/bio/dp/twohead/DPC
ompiler.java:732: make_pop2() in org.biojava.utils.bytecode.ByteCode cannot
be applied to (boolean)
    [javac]           useOldMax.add( ByteCode.make_pop2(true));
    [javac]                                  ^
    [javac] 
/Users/foisys/biojava-live/ant-build/src/main/org/biojava/bio/dp/twohead/DPC
ompiler.java:1000: make_pop2() in org.biojava.utils.bytecode.ByteCode cannot
be applied to (boolean)
    [javac]             ifSmallerThanMax.add( ByteCode.make_pop2 (true));
    [javac]                                           ^
    [javac] 
/Users/foisys/biojava-live/ant-build/src/main/org/biojava/bio/dp/twohead/DPC
ompiler.java:1052: make_pop2() in org.biojava.utils.bytecode.ByteCode cannot
be applied to (boolean)
    [javac]             scoreIsNaN.add( ByteCode.make_pop2(true));
    [javac]                                     ^
    [javac] 
/Users/foisys/biojava-live/ant-build/src/main/org/biojava/bio/dp/twohead/DPC
ompiler.java:1291: make_pop2() in org.biojava.utils.bytecode.ByteCode cannot
be applied to (boolean)
    [javac]             ifSmallerThanMax.add( ByteCode.make_pop2 (true));
    [javac]                                           ^
    [javac] 
/Users/foisys/biojava-live/ant-build/src/main/org/biojava/bio/dp/twohead/DPC
ompiler.java:1347: make_pop2() in org.biojava.utils.bytecode.ByteCode cannot
be applied to (boolean)
    [javac]             scoreIsNaN.add( ByteCode.make_pop2(true));
    [javac]                                     ^
    [javac] Note: 
/Users/foisys/biojava-live/ant-build/src/main/org/biojava/bio/seq/io/Genbank
Format.java uses or overrides a deprecated API.
    [javac] Note: Recompile with -deprecation for details.
    [javac] 5 errors

I am using Mac OS X with Java 1.4.1. It compiles OK on my Linux box however.

Cordially

Sylvain

===================================================================
Sylvain Foisy, Ph. D.
Directeur - operations / Project Manager
BioneQ - Reseau quebecois de bio-informatique
U. de Montreal / Genome-Quebec

Adresse postale:

Departement de biochimie
Pavillon principal
2900, boul. Édouard-Montpetit
Montréal (Québec) H3T 1J4

Tel: (514) 343-6111 x.4066
Courriel: sylvain.foisy at bioneq.qc.ca
===================================================================