[Biojava-l] Re: You major CVD commit

[Matthew Pocock]

Hy Symvain,

As Thomas said, try:

ant clean
ant

If this doesn't work, then I have probably forgotten to do a cvs remove 
on ProjectedFeatureHolder

Matthew

Sylvain Foisy wrote:
> Hi,
> 
> I did my daily cvs update stuff and collected the mods that you described in
> the mailing list. I end up with these errors:
> 
> [javac] Compiling 49 source files to
> /Users/foisys/biojava-live/ant-build/classes/main
>     [javac] 
> /Users/foisys/biojava-live/ant-build/src/main/org/biojava/bio/seq/impl/RevCo
> mpSequence.java:47: reference to ProjectedFeatureHolder is ambiguous, both
> class org.biojava.bio.seq.projection.ProjectedFeatureHolder in
> org.biojava.bio.seq.projection and class
> org.biojava.bio.seq.ProjectedFeatureHolder in org.biojava.bio.seq match
>     [javac]     private ProjectedFeatureHolder pfh;
>     [javac]             ^
>     [javac] 
> /Users/foisys/biojava-live/ant-build/src/main/org/biojava/bio/seq/impl/RevCo
> mpSequence.java:63: reference to ProjectedFeatureHolder is ambiguous, both
> class org.biojava.bio.seq.projection.ProjectedFeatureHolder in
> org.biojava.bio.seq.projection and class
> org.biojava.bio.seq.ProjectedFeatureHolder in org.biojava.bio.seq match
>     [javac]         pfh = new ProjectedFeatureHolder(new
> TranslateFlipContext(seq,this,seq.length()+1,true));
>     [javac]                   ^
>     [javac] Note: Some input files use or override a deprecated API.
>     [javac] Note: Recompile with -deprecation for details.
>     [javac] 2 errors
> 
> Any idea?
> 
> Sylvain
> 
> ===================================================================
> Sylvain Foisy, Ph. D.
> Directeur - operations / Project Manager
> BioneQ - Reseau quebecois de bio-informatique
> U. de Montreal / Genome-Quebec
> 
> Adresse postale:
> 
> Departement de biochimie
> Pavillon principal
> 2900, boul. Édouard-Montpetit
> Montréal (Québec) H3T 1J4
> 
> Tel: (514) 343-6111 x.4066
> Courriel: sylvain.foisy at bioneq.qc.ca
> ===================================================================
> 


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