[Biojava-l] Circular Location

Schreiber, Mark mark.schreiber at agresearch.co.nz
Tue Jan 28 11:48:48 EST 2003


Hi -

I have committed a fix to CVS for this, please feel free to test it. The
circular stuff is, logically speaking, really weird with many odd
concepts so the more testing the better.

- Mark


> -----Original Message-----
> From: Yasumasa Shigemoto [mailto:yshigemo at genes.nig.ac.jp] 
> Sent: Friday, 24 January 2003 6:13 p.m.
> To: biojava-l at biojava.org
> Subject: [Biojava-l] Circular Location
> 
> 
> Hi
> 
> I use the CircularLocation and LocationTools as follows,
> but it seems to return the wrong response.
> 
> import org.biojava.bio.symbol.*;
> 
> public class CircularTest {
>         public static void main(String[] args) {
>                 try {
>                         Location[] locs = new Location[10];
>                         locs[0] = 
> LocationTools.makeCircularLocation(18,24,20);
>                         locs[1] = 
> LocationTools.makeCircularLocation(18,24,20);
>                         locs[2] = 
> LocationTools.makeCircularLocation(2,8,20);
>                         locs[3] = 
> LocationTools.makeCircularLocation(4,10,20);
>                         locs[4] = 
> LocationTools.makeCircularLocation(18,23,20);
>                         
> System.out.println(LocationTools.areEqual(locs[0], locs[1]));
>                         
> System.out.println(LocationTools.contains(locs[0], locs[1]));
>                         
> System.out.println(LocationTools.overlaps(locs[0], locs[2]));
>                         
> System.out.println(LocationTools.overlaps(locs[2], locs[3]));
>                         
> System.out.println(LocationTools.overlaps(locs[0], locs[4]));
>                 } catch (Exception ex) {
>                         ex.printStackTrace();
>                 }
>         }
> }
> 
> > java CircularTest
> true
> true
> false
> true
> false
> 
> I think the whole of result is 'true'.
> 
> Environment
> biojava-1.3pre1.jar, j2sdk1.4.0
> 
> Any help would be most appreciated.
> 
> Yasumasa Shigemoto
> 
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> 
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