[Biojava-l] GUI for cis-regulatory analysis

[Stein Aerts]

We have built a Java GUI on top of BioJava for cis-regulatory sequence 
analysis, especially in higher eukaryotes. It is linked with Ensembl for 
the retrieval of genes and intergenic sequences and with several 
algorithms for comparative genomics and motif detection (using SOAP web 
services).

The description of the program, the jar file, Java Web Start version, 
tutorial, manual, etc. can be found here: 
http://www.esat.kuleuven.ac.be/~saerts/software/toucan.php.
Currently the classes cannot be used directly from the API, and I have 
no good Javadocs at present. If people would find it useful, I could 
consider cleaning up my code for this purpose.

Thank you BioJava!

Best regards & all comments are appreciated,

Stein Aerts.

-- 
Stein Aerts BioI at SISTA
K.U.Leuven ESAT-SCD Belgium
http://www.esat.kuleuven.ac.be/~dna/BioI