[Biojava-l] Genbank Feature properties

Suman Kanuganti bioinformatics4suman at yahoo.com
Tue Aug 19 17:53:51 EDT 2003

Well, I am in way to extract allmost all the features
from a genbank file. 

I could get hold of all the major features such as
CDS, gene, etc .. Now for example, here is a part of
genbank file 

                     /note="match: proteins: Tr:Q9XZU1
Sw:P55060 Tr:O75432
                     Sw:P33307 Tr:Q9ZPY7 Tr:O13671"
                     /product="dJ155G6.2 (chromosome
segregation 1 (yeast

I can extract CDS, its location, its type but I want
the property listed under that with /gene="CSE1L"
which my prof says that its the name of the cds; also
they are other properties like /codon_start /evidence
I dont know if we call it properties or subfeatures, I
thought of calling then SubTags, now how to extract
those from a genbank file.
Thanks for any suggestions,
Suman K

Suman K
BioInformatics Associate,
Genomics Research,
University of Missouri - Columbia.

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