[Biojava-l] Connecting to GenBank

lach at cantv.net lach at cantv.net
Fri Aug 15 15:37:12 EDT 2003


Hi! 

I'm trying these codes (I want to connect to GenBank) 

            ncbiDB = new NCBISequenceDB();
            SequenceFormat sf = ncbiDB.getSequenceFormat();
            secuencia = ncbiDB.getSequence("33653398");
            sf.writeSequence(secuencia, System.out);

and

            ncbiDB = new NCBISequenceDB();
            Sequence secuencia = ncbiDB.getSequence("33653398");
            System.out.println(secuencia.seqString());

where  secuencia is a Sequence Object and ncbiDB is a NCBISequenceDB Object

I  obtain a BioException on ncbiDB.getSequence("33653398") and
ncbiDB.getSequenceFormat().

Can somebody help me? I don't know if I'm using something wrong

Thanks
Luis Ch.
MSN: lach_ve at hotmail.com
lach at cantv.net			  	



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