[Biojava-l] Running apps with Java

[Patrick McConnell]

I have implemented LocalProgram which runs programs based on an XML
description of the parameters.  Program IO is handled in separate threads.
Also, local resources, such as paths to executables and databases, can be
loaded from XML.  I have made the binaries, source, and documentation
available at:


http://www.dbsr.duke.edu/research/softwaredev/libraries/java/jprogram/default.aspx

I think this could be modified for use in BioJava.

Please comment on anything (including my poor coding skills ; - ),

-Patrick