[Biojava-l] Question about BioJava DASClient classes

Keith James kdj@sanger.ac.uk
11 Sep 2002 22:30:46 +0100

>>>>> "Patrick" == Patrick McConnell <MCCon012@mc.duke.edu> writes:

    Patrick> Incidentally, it breaks on fasta34t10d3 - the error is:

    Patrick> org.biojava.utils.ParserException: Fasta parser failed to
    Patrick> recognise line type Parsing line: 37 ; pg_open-ext: -10
    Patrick> -2

Alrighty. That's an easy one - it's designed to break when it finds
new/unknown lines in the output and pg_open-ext is a new one.

When I get hold of the source for 34t10d3 (ftp site is down right now)
I'll add it to the supported versions & the test suite.



- Keith James <kdj@sanger.ac.uk> bioinformatics programming support -
- Pathogen Sequencing Unit, The Wellcome Trust Sanger Institute, UK -