[Biojava-l] Problems in compiling biojava-live

[sanjay]

I had the same problem and Thomas Down helped me out. Try doing a "cvs
update -d" to check out the new directories. This solved the problem for me.

Sanjay

On Wed, Nov 06, 2002 at 09:33:02PM -0500, sanjay wrote:
> Hi,
>
> I had no problems with docbook (perhaps you've already fixed that), but
got
> a different failure in the ant build (see below).
>
> ....
>
> E:\cvs\biojava\biojava-live\ant-build\src\main\org\biojava\bio\seq\i
> o\GAMEFormat.java:37: package org.biojava.bio.seq.io.game12 does not exist
>     [javac] import org.biojava.bio.seq.io.game12.*;

By default, "cvs update" doesn't check out newly created
directories.  Try a "cvs update -d" instead.

     Thomas
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----- Original Message -----
From: <Sylvain.Foisy@bioperl.org>; "Ph. D." <foisys@sympatico.ca>
To: <biojava-l@biojava.org>
Sent: Thursday, November 07, 2002 9:42 AM
Subject: [Biojava-l] Problems in compiling biojava-live


> Hi,
>
> I have some difficulties compiling biojava-live for the past couples of
> days, both on my Linux WS at work and my PowerMac G4 at home. On both
> machines, ant gives me the same warnings:
>
> [javac] /Users/foisys/biojava-live/ant-
> build/src/main/org/biojava/bio/seq/io/GAMEFormat.java:37: package
> org.biojava.bio.seq.io.game12 does not exist
>      [javac] import org.biojava.bio.seq.io.game12.*;
>      [javac] ^
>      [javac] /Users/foisys/biojava-live/ant-
> build/src/main/org/biojava/bio/seq/io/GAMEFormat.java:73: cannot resolve
> symbol
>      [javac] symbol  : class GAMEHandler
>      [javac] location: class org.biojava.bio.seq.io.GAMEFormat
>      [javac]             GAMEHandler handler = new GAMEHandler(listener);
>      [javac]             ^
>      [javac] /Users/foisys/biojava-live/ant-
> build/src/main/org/biojava/bio/seq/io/GAMEFormat.java:73: cannot resolve
> symbol
>      [javac] symbol  : class GAMEHandler
>      [javac] location: class org.biojava.bio.seq.io.GAMEFormat
>      [javac]             GAMEHandler handler = new GAMEHandler(listener);
>      [javac]                                       ^
>      [javac] /Users/foisys/biojava-live/ant-
> build/src/main/org/biojava/bio/seq/projection/ProjectionEngine.java:239:
> make_return() in org.biojava.utils.bytecode.ByteCode cannot be applied
> to (org.biojava.utils.bytecode.GeneratedCodeMethod)
>      [javac]                 Instruction returni =
> ByteCode.make_return(proxyMethod);
>      [javac]                                                   ^
>      [javac] Note: Some input files use or override a deprecated API.
>      [javac] Note: Recompile with -deprecation for details.
>      [javac] 4 errors
>
> BUILD FAILED
>
> Anybody has a clue about this?
>
> Cordially
>
> Sylvain
>
> ++++++++++++++++++++++++++++++++++++++++++++++++++++++++
> Sylvain Foisy, Ph. D.
> Directeur-Operations / Project Manager
> BioNEQ - Le Reseau quebecois de bioinformatique
> Universite de Montreal/Genome-Quebec
> 1260 Crescent, Bureau 201
> Montreal, QC
> Tel.: (514) 878-9911
> E-mail: sylvain.foisy@bioneq.qc.ca
> ++++++++++++++++++++++++++++++++++++++++++++++++++++++++
>
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>
>