[Biojava-l] binary files in CVS

[Matthew Pocock]

Paul Gordon wrote:
> FYI, to binarize:
> 
> cvs admin -ko file
> rm file
> cvs update file
> 
> ----------------------------------------------------
> Purgamentum init, exit purgamentum
> 
> Paul Gordon
> Research Associate
> University of Calgary
> 
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> 

Hum. Doing this on my biojava-live doesn't seem to have solved the 
problem. Is this Keith's stuff? Some tests seem to work, others don't. 
Here is some example output.

-M

     [junit] TEST 
org.biojava.bio.program.ssbind.SSBindNCBItblastn2_0_11Test FAIL
ED
     [junit] Running org.biojava.bio.program.ssbind.SSBindWUblastx2_0a19Test
     [junit] Corrupt GZIP trailer
     [junit] File read interrupted
     [junit] Corrupt GZIP trailer
     [junit] File read interrupted
     [junit] Corrupt GZIP trailer
     [junit] File read interrupted
     [junit] Corrupt GZIP trailer
     [junit] File read interrupted
     [junit] Corrupt GZIP trailer
     [junit] File read interrupted
     [junit] Corrupt GZIP trailer
     [junit] File read interrupted
     [junit] Corrupt GZIP trailer
     [junit] File read interrupted
     [junit] Tests run: 7, Failures: 0, Errors: 7, Time elapsed: 0.6 sec
     [junit] TEST 
org.biojava.bio.program.ssbind.SSBindWUblastx2_0a19Test FAILED
     [junit] Running org.biojava.bio.program.ssbind.SSBindFasta3_3t08Test
     [junit] Tests run: 7, Failures: 0, Errors: 7, Time elapsed: 0.5 sec
     [junit] TEST org.biojava.bio.program.ssbind.SSBindFasta3_3t08Test 
FAILED
     [junit] Running org.biojava.bio.search.SequenceDBSearchResultTest
     [junit] Tests run: 5, Failures: 0, Errors: 0, Time elapsed: 0.83 sec