[Biojava-l] subsequences

Stein Aerts stein.aerts@esat.kuleuven.ac.be
Wed, 16 Jan 2002 10:45:59 +0100


This is a multi-part message in MIME format.

------=_NextPart_000_002A_01C19E7A.FC3F9A70
Content-Type: text/plain;
	charset="iso-8859-1"
Content-Transfer-Encoding: 7bit

Hello, 
The SubSequence class is very usefull, but I have some problems when I use
it:
- If I create a subsequence of a sequence A, then all locations of the
features in the subsequence are the locations of the original sequence A. Is
there an easy way to overcome this problem?
- I cannot create features on a subsequence (ChangeVetoException). Can a
subsequence not be casted to a sequence?

Thank you and kindest regards,
Stein Aerts.

ESAT-SCD, Katholic University Leuven, Belgium
http://www.esat.kuleuven.ac.be/~dna/BioI/



------=_NextPart_000_002A_01C19E7A.FC3F9A70
Content-Type: application/ms-tnef;
	name="winmail.dat"
Content-Transfer-Encoding: base64
Content-Disposition: attachment;
	filename="winmail.dat"
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------=_NextPart_000_002A_01C19E7A.FC3F9A70--