[Biojava-l] Encountered a Parsing Exception on Genbank

cantey.lg@pg.com cantey.lg@pg.com
Wed, 27 Feb 2002 13:27:35 -0500


In attempting to parse the source file for Genbank accession number AB030903,
the following exception was encountered.   Any ideas would be greatly
appreciated !
----------------------------------------------------------

org.biojava.bio.seq.io.ParseException: LOCUS line incorrectly tokenized [LOCUS       AB030903                1441 bp            linear   VRT 15-AUG-2000]

     at org.biojava.bio.seq.io.GenbankContext.parseLocusLinePost127(GenbankFormat.java:611)

     at org.biojava.bio.seq.io.GenbankContext.processHeaderLine(GenbankFormat.java:521)

     at org.biojava.bio.seq.io.GenbankContext.processLine(GenbankFormat.java:372)

     at org.biojava.bio.seq.io.GenbankFormat.readSequence(GenbankFormat.java, Compiled Code)

     at org.biojava.bio.seq.io.StreamReader.nextSequence(StreamReader.java:100)

rethrown as org.biojava.bio.BioException: Could not read sequence

     at org.biojava.bio.seq.io.StreamReader.nextSequence(StreamReader.java:103)

     at seq.UpdatedTestGenbank.main(UpdatedTestGenbank.java, Compiled Code)

Process exited with exit code 1.

Best Regards,
Larry Cantey