[Biojava-l] Spelling in Documentation

[Matthew Pocock]

Thanks Tony,

I think that most (if not all) of these errors are mine - that's what 
you get for trusting a dyslexic with documentation ;-)

Matthew

Tony Watkins wrote:
> Hi.
> 
> Just some simple errors that I think may be spelling related.  Apologies 
> for it being this shallow, but I don't know anything about 
> bioinformatics - period.  However - I hope these observations prove a 
> little useful.
> 
> Documentation -
> 
> Overview.
> 
> (original)
> "Hopefuly, as the project matures, each of these areas will be fleshed 
> out. Also, hopefuly we will develop code for:"
> 
> (suggested correction)
> *Hopefully*, ... Also, *hopefully* we will ...
> 
> Javadoc - package org.biojava.bio.dist
> 
> Description for DistributionTools appears not to follow the format of 
> other class summaries.
> 
> (original)
> "Title: DistributionTools.java Description: A static class to hold 
> static methods for calculations and maniputlations using Distributions."
> 
> (suggested correction)
> ... and *manipulations* using Distributions.
> 
> package - org.biojava.bio.dp
> 
> class statepath
> 
> (original)
> Extends the Alignment interface so that it is explicitly used to 
> represent a state path through an HMM, and the associated emitted 
> sequence and likelyhoods.
> 
> (suggested correction)
> Extends the Alignment interface so that it is explicitly used to 
> represent a state path through an HMM, and the associated emitted 
> sequence and *likelihoods*.
> 
> class BaumWelchTrainer
> 
> (original)
> Train a hidden markov model using maximum likelyhood.
> 
> (suggested correction)
> Train a hidden markov model using maximum *likelihood*.
> 
> class WMAsMM
> 
> (original)
> Wraps a weight matrix up so that it appears to be a very simple hmm.
> 
> (suggested correction)
> Wraps a weight matrix up so that it appears to be a very simple HMM.
> 
> 
> That's all for now...
> 
> 
> 
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