[Biojava-l] Build failing

[Matthew Pocock]

Hi David,

Is it possible that you have either a truncated or corrupted version of 
the biojava source tree? I'm sure we've broken the 1k mark for source 
files now. We're getting better at hiding them away though ;-)

Try checking the files out again from clean. That may sort things out.

Matthew

David Waring wrote:
> I got the following errors when I tried to build biojava-live
> 
> compile:
>     [javac] Compiling 799 source files to
> V:\dwaring\cvs\biojava-live\ant-build\
> classes\main
>     [javac]
> V:\dwaring\cvs\biojava-live\ant-build\src\main\org\biojava\bio\seq\i
> o\filterxml\XMLFilterWriterConfig.java:198: interface expected here
>     [javac]     private static class BlankFilterWriter implements
> XMLFilterWrite
> r {
>     [javac]                                                       ^
>     [javac]
> V:\dwaring\cvs\biojava-live\ant-build\src\main\org\biojava\bio\seq\i
> o\filterxml\XMLFilterWriterConfig.java:217: interface expected here
>     [javac]     private static abstract class PropertyFilterWriter
> implements XM
> LFilterWriter {
>     [javac]
> ^
>     [javac]
> V:\dwaring\cvs\biojava-live\ant-build\src\main\org\biojava\bio\seq\i
> o\filterxml\XMLFilterWriterConfig.java:313: interface expected here
>     [javac]     private static class AndFilterWriter implements
> XMLFilterWriter
> {
>     [javac]                                                     ^
>     [javac]
> V:\dwaring\cvs\biojava-live\ant-build\src\main\org\biojava\bio\seq\i
> o\filterxml\XMLFilterWriterConfig.java:340: interface expected here
>     [javac]     private static class OrFilterWriter implements
> XMLFilterWriter {
> 
>     [javac]                                                    ^
>     [javac]
> V:\dwaring\cvs\biojava-live\ant-build\src\main\org\biojava\bio\seq\i
> o\filterxml\XMLFilterWriterConfig.java:112: cannot resolve symbol
>     [javac] symbol  : class IsTopLevel
>     [javac] location: interface org.biojava.bio.seq.FeatureFilter
>     [javac]                 FeatureFilter.IsTopLevel.class,
>     [javac]                              ^
>     [javac]
> V:\dwaring\cvs\biojava-live\ant-build\src\main\org\biojava\bio\seq\i
> o\filterxml\XMLFilterWriterConfig.java:185:
> writeFilter(org.biojava.bio.seq.Feat
> ureFilter,org.biojava.utils.xml.XMLWriter) in
> org.biojava.bio.seq.io.filterxml.X
> MLFilterWriter cannot be applied to
> (org.biojava.bio.seq.FeatureFilter,org.bioja
> va.utils.xml.XMLWriter,org.biojava.bio.seq.io.filterxml.XMLFilterWriterConfi
> g)
>     [javac]                 xfw.writeFilter(ff, xw, this);
>     [javac]                    ^
>     [javac]
> V:\dwaring\cvs\biojava-live\ant-build\src\main\org\biojava\bio\progr
> am\das\DASMergeFeatureHolder.java:35: cannot resolve symbol
>     [javac] symbol  : method getMergeMap  ()
>     [javac] location: class
> org.biojava.bio.program.das.DASMergeFeatureHolder
>     [javac]     Map mm = getMergeMap();
>     [javac]                  ^
>     [javac]
> V:\dwaring\cvs\biojava-live\ant-build\src\main\org\biojava\bio\progr
> am\das\DASMergeFeatureHolder.java:48: cannot resolve symbol
>     [javac] symbol  : method getMergeMap  ()
>     [javac] location: class
> org.biojava.bio.program.das.DASMergeFeatureHolder
>     [javac]     Map mm = getMergeMap();
>     [javac]                  ^
>     [javac] Note: Some input files use or override a deprecated API.
>     [javac] Note: Recompile with -deprecation for details.
>     [javac] 8 errors
> 
> BUILD FAILED
> file:V:/dwaring/cvs/biojava-live/build.xml:281: Compile failed; see the
> compiler
>  error output for details.
> 
> Total time: 1 minute 27 seconds
> 
> 
> 
> _______________________________________________
> Biojava-l mailing list  -  Biojava-l@biojava.org
> http://biojava.org/mailman/listinfo/biojava-l
> 


-- 
BioJava Consulting LTD - Support and training for BioJava
http://www.biojava.co.uk

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