[Biojava-l] BioSQL

[Yasumasa Shigemoto]

Hi,

I'm trying BioSQL but I don't understand the following 'biodatabases'.

public BioSQLSequenceDB(java.lang.String dbURL,
                        java.lang.String dbUser,
                        java.lang.String dbPass,
                        java.lang.String biodatabase,
                        boolean create)

What is specified for the biodatabase for example?

I try "SeqDumper.java" but I get the Exception.

$ java biosql.SeqDumper "jdbc:postgresql:biosqldb" "postgres" "postgres"
""
Exception in thread "main" java.sql.SQLException: No suitable driver
        at java.sql.DriverManager.getConnection(DriverManager.java:537)
        at java.sql.DriverManager.getConnection(DriverManager.java:177)
        at
org.biojava.bio.seq.db.biosql.JDBCConnectionPool.takeConnection(JDBCC
onnectionPool.java:62)
        at
org.biojava.bio.seq.db.biosql.BioSQLSequenceDB.isBioentryPropertySupp
orted(BioSQLSequenceDB.java:1096)
rethrown as org.biojava.bio.BioRuntimeException
        at
org.biojava.bio.seq.db.biosql.BioSQLSequenceDB.isBioentryPropertySupp
orted(BioSQLSequenceDB.java:1107)
        at
org.biojava.bio.seq.db.biosql.BioSQLSequenceDB.<init>(BioSQLSequenceD
B.java:103)
        at biosql.SeqDumper.main(SeqDumper.java:26)

My environment is:
RedHat Linux 7.1
PostgreSQL 7.0.3
Biojava 1.2.1

Yasumasa Shigemoto