[Biojava-l] biojava object

[Matthew Pocock]

Hi Subba,

Take a look at the org.biojava.bio.seq.io package. There are some 
interfaces and classes there that allow you to parse the three formats 
you mention (and others). You can use the utility methods in SeqIOTools 
to get instances of these parsers easily.

Once you have used a parser to make a Sequence instance, you can write a 
program to dump out this information to a file in your own format. You 
can use the methods inherited from the SymbolList interface to access 
the raw sequence, and the methods inherited from FeatureHolder to access 
the features. Lastly, annotation pertaining to the entire sequence can 
be accessed by calling getAnnotation on the sequence and then looking 
inside this Annotatable instance.

Does this help?

Matthew

Subba_Raju wrote:

> dear associates,
> i am new to biojava 
> my problem is in finding out biojava object acts as an interface, which
> actually converts different file formats(genbank/swissprot/embl) in to one
> single format perse my own database format
> thanks for u r earlier reply
> Subba Raju.
> 
> 
> Subba Raju.
> 
> 
> _______________________________________________
> Biojava-l mailing list  -  Biojava-l@biojava.org
> http://biojava.org/mailman/listinfo/biojava-l