[Biojava-l] migrating to biocorba 0.2

[Matthew Pocock]

Hi Jason,

The old idl2java compiler had two modes - one that generated stubs that 
you then sub-classed  to provide the implementation and another that 
generated stubs that delegated off to an Operations interface that 
looked remarkably like the IDL. It looks like the 1.3 compiler is 
producing the first sort of interface by inheriting in the Operations. 
If you look in org.biocorba.seqcore.AnonymousSeq you will find the 
'missing' methods.

M

Jason Stajich wrote:

> I'm running java 1.3, idlj comes with it rather than idltojava.
> 
> When I run it I get an interface produced:
> 
> package org.biocorba.seqcore;
> 
> /**
> * org/biocorba/seqcore/PrimarySeq.java
> * Generated by the IDL-to-Java compiler (portable), version "3.0"
> * from ../idl/biocorba.02-01-2001.idl
> * Monday, March 26, 2001 12:09:22 PM EST
> */
> 
> 
> // have the identical value.
> public interface PrimarySeq extends PrimarySeqOperations,
> org.biocorba.seqcore.A
> nonymousSeq
, org.omg.CORBA.portable.IDLEntity
> {
> } // interface PrimarySeq
> 
> VERSUS the old PrimarySeq.java generated interface
> 
> /*
>  * File: ..\SRC/ORG/BIOCORBA/SEQCORE/PRIMARYSEQ.JAVA
>  * From: BIOCORBA.11-02-2000.IDL
>  * Date: Fri Feb 11 14:53:21 2000
>  *   By: idltojava Java IDL 1.2 Aug 18 1998 16:25:34
>  */
> 
> package org.Biocorba.Seqcore;
> public interface PrimarySeq
>     extends org.omg.CORBA.Object, org.omg.CORBA.portable.IDLEntity,
>             org.Biocorba.Seqcore.AnonymousSeq {
>     String display_id();
>     String primary_id();
>     String accession_number();
>     int version();
> }
> 
> 
> I ran this as idlj -fall ../idl/biocorba.02-01-2001.idl
> 
> None of the methods are showing up in the interface.  Anyone else had
> experience? I'm just following the sun IDL docs
> (http://java.sun.com/j2se/1.3/docs/guide/idl/GShome.html)
> 
> -jason
> Jason Stajich
> jason@chg.mc.duke.edu
> Center for Human Genetics
> Duke University Medical Center
> http://www.chg.duke.edu/
> 
> 
> 
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