[Biojava-l] bugs ?

Cox, Greg gcox@netgenics.com
Thu, 22 Mar 2001 09:52:59 -0500


I don't know about the first part, but the second I believe is either the
file isn't terminated by a newline, or it's in UNIX format on a PC (possibly
vice versa).

Greg

> -----Original Message-----
> From: zhao guijun [mailto:ls50@zsu.edu.cn]
> Sent: Thursday, March 22, 2001 9:41 AM
> To: biojava-l@biojava.org
> Subject: [Biojava-l] bugs ?
> Is it a bug?   and  more,
> 
> java seq/TestGenbank seq/AL121903.genbank
> AL121903 has 193 features
> java.io.IOException: Premature end of   stream for GENBANK
>         at 
> org.biojava.bio.seq.io.GenbankFormat.readSequence(GenbankForma
> t.java:112, Compiled Code)
>         at 
> org.biojava.bio.seq.io.StreamReader.nextSequence(StreamReader.
> java:99, Compiled Code)
> rethrown as org.biojava.bio.BioException: Could not read sequence
>         at 
> org.biojava.bio.seq.io.StreamReader.nextSequence(StreamReader.
> java:102, Compiled Code)
>         at seq.TestGenbank.main(TestGenbank.java:33, Compiled Code)
> 
> 
> what`s wrong?
>                     
> 
>  zhao guijun
>  ls50@zsu.edu.cn
> 
> 
> 
> 
> _______________________________________________
> Biojava-l mailing list  -  Biojava-l@biojava.org
> http://biojava.org/mailman/listinfo/biojava-l
>