[Biojava-l] Bug, or Feature? In TokenParser.TPStreamParser

[Keith James]

>>>>> "Thomas" == Thomas Down <td2@sanger.ac.uk> writes:

[...]

    Thomas> So right now, the bug is in EmblFileFormat (which is
    Thomas> ignoring the start and length parameters passed into
    Thomas> addSymbols).  It's a fairly minor change to fix this.

I think I've nailed this one now. It exposed a silly Obiwan error in
SeqIOEventEmitter (mine also).

Checked in changes to EmblFileFormer, GenbankFileFormer,
SeqIOEventEmitter. The read/write demos for these formats seem to be
giving the right results. Hope this helps the situation.

-- 

-= Keith James - kdj@sanger.ac.uk - http://www.sanger.ac.uk/Users/kdj =-
The Sanger Centre, Wellcome Trust Genome Campus, Hinxton, Cambs CB10 1SA