[Biojava-l] Re: AlphabetManager.xml

[Michael L. Heuer]

> On Tue, Jun 12, 2001 at 12:21:11PM -0400, Cox, Greg wrote:
> > I remember something similar coming up about four months ago.  build.Builder
> > isn't reliable and isn't being maintained; are there any compelling reasons
> > for keeping it around?  Otherwise I'd like to see it go.
>
> The one thing it does which the ANT script doesn't do at
> the moment is neatly group packages in the javadoc.  I have
> no attachment to the old builder, and I don't think anyone else
> does, either.  Unless we hear screams of protest, whoever checks
> in the patch to fix the javadoc gets to ceremonially "cvs remove"
> the old builder :).
>
> Any takers?

how about

~ > cvs diff build.xml
Index: build.xml
===================================================================
RCS file: /home/repository/biojava/biojava-live/build.xml,v
retrieving revision 1.8
diff -r1.8 build.xml
202c202,209
<     />
---
>     >
>       <group title="Core Packages"
packages="org.biojava.bio:org.biojava.bio.dist:org.biojava.bio.search:org.biojava.bio.seq:org.biojava.bio.seq.db:org.biojava.bio.seq.genomic:org.biojava.bio.seq.io:org.biojava.bio.symbol"
/>
>       <group title="Experimental/New Packages"
packages="org.biojava.bio.proteomics:org.biojava.stats.svm:org.biojava.stats.svm.tools:org.biojava.bio.seq.homol"
/>
>       <group title="User Interface Components"
packages="org.biojava.bio.gui:org.biojava.bio.gui.sequence" />
>       <group title="Developers' Packages"
packages="org.biojava.bio.seq.impl:org.biojava.utils:org.biojava.utils.cache:org.biojava.utils.contract:org.biojava.utils.xml:org.biojava.utils.query:org.biojava.utils.stax"
/>
>       <group title="External Tools"
packages="org.biojava.bio.program:org.biojava.bio.program.das:org.biojava.bio.program.gff:org.biojava.bio.program.sax:org.biojava.bio.program.seach:org.biojava.bio.program.xml:org.biojava.bio.program.game:org.biojava.bio.program.search:org.biojava.bio.program.xff"
/>
>       <group title="Dynamic Programming Packages"
packages="org.biojava.bio.dp:org.biojava.bio.dp.onehead:org.biojava.bio.dp.twohead"
/>
>     </javadoc>

   michael