[Biojava-l] biojava-live build problems, please help
Xuefeng Bruce Ling
ling@ling.ipc.net
Thu, 25 Jan 2001 13:19:05 -0800
--=====================_19812548==_.ALT
Content-Type: text/plain; charset="us-ascii"
Hi,
I am using the biojava-live. I did the cvs update -d before I run the "java
build.Builder all" and I get a lot of error messages as following.
I have put the root of the package in the CLASSPATH. Actually I have checked
some of the mistakes. The problems come where the some of the files are
missing:
Can you help? BTW, the document at the website is not updated yet.
Running complete build...
Deleting old build tree...
Compiling...
Note: /bcreek7/ling/biojava-live/src/GNOME/_UnknownImplBase.java uses or
overrides a deprecated API. Recompile with "-deprecation" for details.
1 warning
Note: 8 files use or override a deprecated API. Recompile with "-deprecation"
for details.
1 warning
src/org/biojava/bio/seq/DNATools.java:248: Interface
org.biojava.bio.seq.ReversibleTranslationTable of nested class
org.biojava.bio.seq.DNATools. DNAComplementTranslationTable not found.
implements ReversibleTranslationTable {
^
/bcreek7/ling/biojava-live/src/org/acedb/seq/AceSequence.java:148: Ambiguous
class: org.biojava.bio.symbol.SymbolParser and
org.biojava.bio.seq.io.SymbolParser
SymbolParser rParser = getAlphabet().getParser("token");
^
/bcreek7/ling/biojava-live/src/org/acedb/seq/AceSequence.java:226: Class
org.acedb.seq.Edit not found.
public void edit(Edit edit) throws ChangeVetoException {
^
src/org/biojava/bio/symbol/Alphabet.java:105: nested class
org.biojava.bio.symbol.Alphabet. EmptyAlphabet is an abstract class. It can't
be instantiated.
static final Alphabet EMPTY_ALPHABET = new EmptyAlphabet();
^
src/org/biojava/bio/symbol/Alphabet.java:110: nested class
org.biojava.bio.symbol.Alphabet. EmptyAlphabet must be declared abstract. It
does not define void removeChangeListener(org.biojava.utils.ChangeListener)
from interface org.biojava.utils.Changeable.
public class EmptyAlphabet implements FiniteAlphabet, Serializable {
^
src/org/biojava/bio/symbol/Alphabet.java:110: nested class
org.biojava.bio.symbol.Alphabet. EmptyAlphabet must be declared abstract. It
does not define void removeChangeListener(org.biojava.utils.ChangeListener,
org.biojava.utils.ChangeType) from interface org.biojava.utils.Changeable.
public class EmptyAlphabet implements FiniteAlphabet, Serializable {
^
src/org/biojava/bio/symbol/Alphabet.java:110: nested class
org.biojava.bio.symbol.Alphabet. EmptyAlphabet must be declared abstract. It
does not define void addChangeListener(org.biojava.utils.ChangeListener) from
interface org.biojava.utils.Changeable.
public class EmptyAlphabet implements FiniteAlphabet, Serializable {
^
src/org/biojava/bio/symbol/Alphabet.java:110: nested class
org.biojava.bio.symbol.Alphabet. EmptyAlphabet must be declared abstract. It
does not define void addChangeListener(org.biojava.utils.ChangeListener,
org.biojava.utils.ChangeType) from interface org.biojava.utils.Changeable.
public class EmptyAlphabet implements FiniteAlphabet, Serializable {
^
src/org/biojava/bio/symbol/AlphabetManager.java:30: Package com.sun.xml.parser
not found in import.
import com.sun.xml.parser.*;
^
src/org/biojava/bio/symbol/AlphabetManager.java:31: Package com.sun.xml.tree
not found in import.
import com.sun.xml.tree.*;
^
src/org/biojava/bio/seq/DNATools.java:37: Class
org.biojava.bio.seq.ReversibleTranslationTable not found.
private static final ReversibleTranslationTable complementTable;
^
src/org/biojava/bio/seq/DNATools.java:70: Method getAmbiguity(java.util.Set)
not found in interface org.biojava.bio.symbol.FiniteAlphabet.
symbolToComplement.put(as, dna.getAmbiguity(l));
^
src/org/biojava/bio/seq/DNATools.java:72: Class
org.biojava.bio.seq.ReversibleTranslationTable not found in =.
complementTable = new DNAComplementTranslationTable();
^
src/org/biojava/bio/seq/DNATools.java:72: Incompatible type for =. Can't
convert org.biojava.bio.seq.DNATools.DNAComplementTranslationTable to
org.biojava.bio.seq.ReversibleTranslationTable.
complementTable = new DNAComplementTranslationTable();
^
src/org/biojava/bio/seq/DNATools.java:105: Ambiguous class:
org.biojava.bio.seq.io.SymbolParser and org.biojava.bio.symbol.SymbolParser
SymbolParser p = getDNA().getParser("token");
^
src/org/biojava/bio/seq/DNATools.java:218: Undefined variable or class name:
SymbolListViews
return SymbolListViews.translate(list, complementTable());
^
src/org/biojava/bio/seq/DNATools.java:230: Undefined variable or class name:
SymbolListViews
return SymbolListViews.translate(SymbolListViews.reverse(list),
complementTable());
^
src/org/biojava/bio/seq/DNATools.java:239: Class
org.biojava.bio.seq.ReversibleTranslationTable not found.
public static ReversibleTranslationTable complementTable() {
^
src/org/biojava/bio/symbol/AlphabetManager.java:580: nested class
org.biojava.bio.symbol.AlphabetManager. WellKnownAlphabet must be declared
abstract. It does not define void
removeChangeListener(org.biojava.utils.ChangeListener) from interface
org.biojava.utils.Changeable.
private static class WellKnownAlphabet
^
src/org/biojava/bio/symbol/AlphabetManager.java:580: nested class
org.biojava.bio.symbol.AlphabetManager. WellKnownAlphabet must be declared
abstract. It does not define void
removeChangeListener(org.biojava.utils.ChangeListener,
org.biojava.utils.ChangeType) from interface org.biojava.utils.Changeable.
private static class WellKnownAlphabet
^
src/org/biojava/bio/symbol/AlphabetManager.java:580: nested class
org.biojava.bio.symbol.AlphabetManager. WellKnownAlphabet must be declared
abstract. It does not define void
addChangeListener(org.biojava.utils.ChangeListener) from interface
org.biojava.utils.Changeable.
private static class WellKnownAlphabet
^
src/org/biojava/bio/symbol/AlphabetManager.java:580: nested class
org.biojava.bio.symbol.AlphabetManager. WellKnownAlphabet must be declared
abstract. It does not define void
addChangeListener(org.biojava.utils.ChangeListener,
org.biojava.utils.ChangeType) from interface org.biojava.utils.Changeable.
private static class WellKnownAlphabet
^
src/org/biojava/bio/symbol/AlphabetManager.java:617: nested class
org.biojava.bio.symbol.AlphabetManager. WellKnownSymbol must be declared
abstract. It does not define void
removeChangeListener(org.biojava.utils.ChangeListener) from interface
org.biojava.utils.Changeable.
private static class WellKnownSymbol extends SimpleAtomicSymbol
^
src/org/biojava/bio/symbol/AlphabetManager.java:617: nested class
org.biojava.bio.symbol.AlphabetManager. WellKnownSymbol must be declared
abstract. It does not define void
removeChangeListener(org.biojava.utils.ChangeListener,
org.biojava.utils.ChangeType) from interface org.biojava.utils.Changeable.
private static class WellKnownSymbol extends SimpleAtomicSymbol
^
src/org/biojava/bio/symbol/AlphabetManager.java:617: nested class
org.biojava.bio.symbol.AlphabetManager. WellKnownSymbol must be declared
abstract. It does not define void
addChangeListener(org.biojava.utils.ChangeListener) from interface
org.biojava.utils.Changeable.
private static class WellKnownSymbol extends SimpleAtomicSymbol
^
src/org/biojava/bio/symbol/AlphabetManager.java:617: nested class
org.biojava.bio.symbol.AlphabetManager. WellKnownSymbol must be declared
abstract. It does not define void
addChangeListener(org.biojava.utils.ChangeListener,
org.biojava.utils.ChangeType) from interface org.biojava.utils.Changeable.
private static class WellKnownSymbol extends SimpleAtomicSymbol
^
src/org/biojava/bio/symbol/AlphabetManager.java:728: nested class
org.biojava.bio.symbol.AlphabetManager. GapSymbol must be declared abstract. It
does not define void removeChangeListener(org.biojava.utils.ChangeListener)
from interface org.biojava.utils.Changeable.
private static class GapSymbol
^
src/org/biojava/bio/symbol/AlphabetManager.java:728: nested class
org.biojava.bio.symbol.AlphabetManager. GapSymbol must be declared abstract. It
does not define void removeChangeListener(org.biojava.utils.ChangeListener,
org.biojava.utils.ChangeType) from interface org.biojava.utils.Changeable.
private static class GapSymbol
^
src/org/biojava/bio/symbol/AlphabetManager.java:728: nested class
org.biojava.bio.symbol.AlphabetManager. GapSymbol must be declared abstract. It
does not define void addChangeListener(org.biojava.utils.ChangeListener) from
interface org.biojava.utils.Changeable.
private static class GapSymbol
^
src/org/biojava/bio/symbol/AlphabetManager.java:728: nested class
org.biojava.bio.symbol.AlphabetManager. GapSymbol must be declared abstract. It
does not define void addChangeListener(org.biojava.utils.ChangeListener,
org.biojava.utils.ChangeType) from interface org.biojava.utils.Changeable.
private static class GapSymbol
^
src/org/biojava/bio/symbol/SimpleAlphabet.java:35: class
org.biojava.bio.symbol.SimpleAlphabet must be declared abstract. It does not
define void removeChangeListener(org.biojava.utils.ChangeListener) from
interface org.biojava.utils.Changeable.
public class SimpleAlphabet extends AbstractAlphabet implements Serializable {
^
src/org/biojava/bio/symbol/SimpleAlphabet.java:35: class
org.biojava.bio.symbol.SimpleAlphabet must be declared abstract. It does not
define void removeChangeListener(org.biojava.utils.ChangeListener,
org.biojava.utils.ChangeType) from interface org.biojava.utils.Changeable.
public class SimpleAlphabet extends AbstractAlphabet implements Serializable {
^
src/org/biojava/bio/symbol/SimpleAlphabet.java:35: class
org.biojava.bio.symbol.SimpleAlphabet must be declared abstract. It does not
define void addChangeListener(org.biojava.utils.ChangeListener) from interface
org.biojava.utils.Changeable.
public class SimpleAlphabet extends AbstractAlphabet implements Serializable {
^
src/org/biojava/bio/symbol/SimpleAlphabet.java:35: class
org.biojava.bio.symbol.SimpleAlphabet must be declared abstract. It does not
define void addChangeListener(org.biojava.utils.ChangeListener,
org.biojava.utils.ChangeType) from interface org.biojava.utils.Changeable.
public class SimpleAlphabet extends AbstractAlphabet implements Serializable {
^
src/org/biojava/bio/symbol/SimpleAtomicSymbol.java:32: class
org.biojava.bio.symbol.SimpleAtomicSymbol must be declared abstract. It does
not define void removeChangeListener(org.biojava.utils.ChangeListener) from
interface org.biojava.utils.Changeable.
public class SimpleAtomicSymbol implements AtomicSymbol {
^
src/org/biojava/bio/symbol/SimpleAtomicSymbol.java:32: class
org.biojava.bio.symbol.SimpleAtomicSymbol must be declared abstract. It does
not define void removeChangeListener(org.biojava.utils.ChangeListener,
org.biojava.utils.ChangeType) from interface org.biojava.utils.Changeable.
public class SimpleAtomicSymbol implements AtomicSymbol {
^
src/org/biojava/bio/symbol/SimpleAtomicSymbol.java:32: class
org.biojava.bio.symbol.SimpleAtomicSymbol must be declared abstract. It does
not define void addChangeListener(org.biojava.utils.ChangeListener) from
interface org.biojava.utils.Changeable.
public class SimpleAtomicSymbol implements AtomicSymbol {
^
src/org/biojava/bio/symbol/SimpleAtomicSymbol.java:32: class
org.biojava.bio.symbol.SimpleAtomicSymbol must be declared abstract. It does
not define void addChangeListener(org.biojava.utils.ChangeListener,
org.biojava.utils.ChangeType) from interface org.biojava.utils.Changeable.
public class SimpleAtomicSymbol implements AtomicSymbol {
^
src/org/biojava/bio/symbol/SimpleAtomicSymbol.java:36: class
org.biojava.bio.symbol.SingletonAlphabet is an abstract class. It can't be
instantiated.
delegate = new SimpleSymbol(token, name, new SingletonAlphabet(this),
annotation);
^
src/org/biojava/bio/symbol/SimpleSymbol.java:34: class
org.biojava.bio.symbol.SimpleSymbol must be declared abstract. It does not
define void removeChangeListener(org.biojava.utils.ChangeListener) from
interface org.biojava.utils.Changeable.
public class SimpleSymbol implements Symbol, Serializable {
^
src/org/biojava/bio/symbol/SimpleSymbol.java:34: class
org.biojava.bio.symbol.SimpleSymbol must be declared abstract. It does not
define void removeChangeListener(org.biojava.utils.ChangeListener,
org.biojava.utils.ChangeType) from interface org.biojava.utils.Changeable.
public class SimpleSymbol implements Symbol, Serializable {
^
src/org/biojava/bio/symbol/SimpleSymbol.java:34: class
org.biojava.bio.symbol.SimpleSymbol must be declared abstract. It does not
define void addChangeListener(org.biojava.utils.ChangeListener) from interface
org.biojava.utils.Changeable.
public class SimpleSymbol implements Symbol, Serializable {
^
src/org/biojava/bio/symbol/SimpleSymbol.java:34: class
org.biojava.bio.symbol.SimpleSymbol must be declared abstract. It does not
define void addChangeListener(org.biojava.utils.ChangeListener,
org.biojava.utils.ChangeType) from interface org.biojava.utils.Changeable.
public class SimpleSymbol implements Symbol, Serializable {
^
src/org/biojava/bio/symbol/SingletonAlphabet.java:35: class
org.biojava.bio.symbol.SingletonAlphabet must be declared abstract. It does not
define void removeChangeListener(org.biojava.utils.ChangeListener) from
interface org.biojava.utils.Changeable.
public class SingletonAlphabet implements FiniteAlphabet, Serializable {
^
src/org/biojava/bio/symbol/SingletonAlphabet.java:35: class
org.biojava.bio.symbol.SingletonAlphabet must be declared abstract. It does not
define void removeChangeListener(org.biojava.utils.ChangeListener,
org.biojava.utils.ChangeType) from interface org.biojava.utils.Changeable.
public class SingletonAlphabet implements FiniteAlphabet, Serializable {
^
src/org/biojava/bio/symbol/SingletonAlphabet.java:35: class
org.biojava.bio.symbol.SingletonAlphabet must be declared abstract. It does not
define void addChangeListener(org.biojava.utils.ChangeListener) from interface
org.biojava.utils.Changeable.
public class SingletonAlphabet implements FiniteAlphabet, Serializable {
^
src/org/biojava/bio/symbol/SingletonAlphabet.java:35: class
org.biojava.bio.symbol.SingletonAlphabet must be declared abstract. It does not
define void addChangeListener(org.biojava.utils.ChangeListener,
org.biojava.utils.ChangeType) from interface org.biojava.utils.Changeable.
public class SingletonAlphabet implements FiniteAlphabet, Serializable {
^
47 errors
--=====================_19812548==_.ALT
Content-Type: text/html; charset="us-ascii"
<html>
Hi,<br>
<br>
I am using the biojava-live. I did the cvs update -d before I run
the "java build.Builder all" and I get a lot of error messages
as following.<br>
I have put the root of the package in the CLASSPATH. Actually
I have checked some of the mistakes. The problems come where the
some of the files are missing:<br>
<br>
Can you help?<x-tab> </x-tab>BTW, the document at the
website is not updated yet.<br>
<br>
<font face="Courier New, Courier">Running complete build...<br>
Deleting old build tree...<br>
Compiling...<br>
Note: /bcreek7/ling/biojava-live/src/GNOME/_UnknownImplBase.java uses or
overrides a deprecated API. Recompile with "-deprecation"
for details.<br>
1 warning<br>
Note: 8 files use or override a deprecated API. Recompile with
"-deprecation" for details.<br>
1 warning<br>
src/org/biojava/bio/seq/DNATools.java:248: Interface
org.biojava.bio.seq.ReversibleTranslationTable of nested class
org.biojava.bio.seq.DNATools. DNAComplementTranslationTable not
found.<br>
implements ReversibleTranslationTable {<br>
^<br>
/bcreek7/ling/biojava-live/src/org/acedb/seq/AceSequence.java:148:
Ambiguous class: org.biojava.bio.symbol.SymbolParser and
org.biojava.bio.seq.io.SymbolParser<br>
SymbolParser rParser =
getAlphabet().getParser("token");<br>
^<br>
/bcreek7/ling/biojava-live/src/org/acedb/seq/AceSequence.java:226: Class
org.acedb.seq.Edit not found.<br>
public void edit(Edit edit) throws ChangeVetoException {<br>
^<br>
src/org/biojava/bio/symbol/Alphabet.java:105: nested class
org.biojava.bio.symbol.Alphabet. EmptyAlphabet is an abstract class. It
can't be instantiated.<br>
static final Alphabet EMPTY_ALPHABET = new EmptyAlphabet();<br>
^<br>
src/org/biojava/bio/symbol/Alphabet.java:110: nested class
org.biojava.bio.symbol.Alphabet. EmptyAlphabet must be declared abstract.
It does not define void
removeChangeListener(org.biojava.utils.ChangeListener) from interface
org.biojava.utils.Changeable.<br>
public class EmptyAlphabet implements FiniteAlphabet, Serializable
{<br>
^<br>
src/org/biojava/bio/symbol/Alphabet.java:110: nested class
org.biojava.bio.symbol.Alphabet. EmptyAlphabet must be declared abstract.
It does not define void
removeChangeListener(org.biojava.utils.ChangeListener,
org.biojava.utils.ChangeType) from interface
org.biojava.utils.Changeable.<br>
public class EmptyAlphabet implements FiniteAlphabet, Serializable
{<br>
^<br>
src/org/biojava/bio/symbol/Alphabet.java:110: nested class
org.biojava.bio.symbol.Alphabet. EmptyAlphabet must be declared abstract.
It does not define void
addChangeListener(org.biojava.utils.ChangeListener) from interface
org.biojava.utils.Changeable.<br>
public class EmptyAlphabet implements FiniteAlphabet, Serializable
{<br>
^<br>
src/org/biojava/bio/symbol/Alphabet.java:110: nested class
org.biojava.bio.symbol.Alphabet. EmptyAlphabet must be declared abstract.
It does not define void
addChangeListener(org.biojava.utils.ChangeListener,
org.biojava.utils.ChangeType) from interface
org.biojava.utils.Changeable.<br>
public class EmptyAlphabet implements FiniteAlphabet, Serializable
{<br>
^<br>
src/org/biojava/bio/symbol/AlphabetManager.java:30: Package
com.sun.xml.parser not found in import.<br>
import com.sun.xml.parser.*;<br>
^<br>
src/org/biojava/bio/symbol/AlphabetManager.java:31: Package
com.sun.xml.tree not found in import.<br>
import com.sun.xml.tree.*;<br>
^<br>
src/org/biojava/bio/seq/DNATools.java:37: Class
org.biojava.bio.seq.ReversibleTranslationTable not found.<br>
private static final ReversibleTranslationTable
complementTable;<br>
^<br>
src/org/biojava/bio/seq/DNATools.java:70: Method
getAmbiguity(java.util.Set) not found in interface
org.biojava.bio.symbol.FiniteAlphabet.<br>
symbolToComplement.put(as,
dna.getAmbiguity(l));<br>
^<br>
src/org/biojava/bio/seq/DNATools.java:72: Class
org.biojava.bio.seq.ReversibleTranslationTable not found in =.<br>
complementTable = new
DNAComplementTranslationTable();<br>
^<br>
src/org/biojava/bio/seq/DNATools.java:72: Incompatible type for =. Can't
convert org.biojava.bio.seq.DNATools.DNAComplementTranslationTable to
org.biojava.bio.seq.ReversibleTranslationTable.<br>
complementTable = new
DNAComplementTranslationTable();<br>
^<br>
src/org/biojava/bio/seq/DNATools.java:105: Ambiguous class:
org.biojava.bio.seq.io.SymbolParser and
org.biojava.bio.symbol.SymbolParser<br>
SymbolParser p =
getDNA().getParser("token");<br>
^<br>
src/org/biojava/bio/seq/DNATools.java:218: Undefined variable or class
name: SymbolListViews<br>
return SymbolListViews.translate(list,
complementTable());<br>
^<br>
src/org/biojava/bio/seq/DNATools.java:230: Undefined variable or class
name: SymbolListViews<br>
return
SymbolListViews.translate(SymbolListViews.reverse(list),
complementTable());<br>
^<br>
src/org/biojava/bio/seq/DNATools.java:239: Class
org.biojava.bio.seq.ReversibleTranslationTable not found.<br>
public static ReversibleTranslationTable complementTable() {<br>
^<br>
src/org/biojava/bio/symbol/AlphabetManager.java:580: nested class
org.biojava.bio.symbol.AlphabetManager. WellKnownAlphabet must be
declared abstract. It does not define void
removeChangeListener(org.biojava.utils.ChangeListener) from interface
org.biojava.utils.Changeable.<br>
private static class WellKnownAlphabet<br>
^<br>
src/org/biojava/bio/symbol/AlphabetManager.java:580: nested class
org.biojava.bio.symbol.AlphabetManager. WellKnownAlphabet must be
declared abstract. It does not define void
removeChangeListener(org.biojava.utils.ChangeListener,
org.biojava.utils.ChangeType) from interface
org.biojava.utils.Changeable.<br>
private static class WellKnownAlphabet<br>
^<br>
src/org/biojava/bio/symbol/AlphabetManager.java:580: nested class
org.biojava.bio.symbol.AlphabetManager. WellKnownAlphabet must be
declared abstract. It does not define void
addChangeListener(org.biojava.utils.ChangeListener) from interface
org.biojava.utils.Changeable.<br>
private static class WellKnownAlphabet<br>
^<br>
src/org/biojava/bio/symbol/AlphabetManager.java:580: nested class
org.biojava.bio.symbol.AlphabetManager. WellKnownAlphabet must be
declared abstract. It does not define void
addChangeListener(org.biojava.utils.ChangeListener,
org.biojava.utils.ChangeType) from interface
org.biojava.utils.Changeable.<br>
private static class WellKnownAlphabet<br>
^<br>
src/org/biojava/bio/symbol/AlphabetManager.java:617: nested class
org.biojava.bio.symbol.AlphabetManager. WellKnownSymbol must be declared
abstract. It does not define void
removeChangeListener(org.biojava.utils.ChangeListener) from interface
org.biojava.utils.Changeable.<br>
private static class WellKnownSymbol extends
SimpleAtomicSymbol<br>
^<br>
src/org/biojava/bio/symbol/AlphabetManager.java:617: nested class
org.biojava.bio.symbol.AlphabetManager. WellKnownSymbol must be declared
abstract. It does not define void
removeChangeListener(org.biojava.utils.ChangeListener,
org.biojava.utils.ChangeType) from interface
org.biojava.utils.Changeable.<br>
private static class WellKnownSymbol extends
SimpleAtomicSymbol<br>
^<br>
src/org/biojava/bio/symbol/AlphabetManager.java:617: nested class
org.biojava.bio.symbol.AlphabetManager. WellKnownSymbol must be declared
abstract. It does not define void
addChangeListener(org.biojava.utils.ChangeListener) from interface
org.biojava.utils.Changeable.<br>
private static class WellKnownSymbol extends
SimpleAtomicSymbol<br>
^<br>
src/org/biojava/bio/symbol/AlphabetManager.java:617: nested class
org.biojava.bio.symbol.AlphabetManager. WellKnownSymbol must be declared
abstract. It does not define void
addChangeListener(org.biojava.utils.ChangeListener,
org.biojava.utils.ChangeType) from interface
org.biojava.utils.Changeable.<br>
private static class WellKnownSymbol extends
SimpleAtomicSymbol<br>
^<br>
src/org/biojava/bio/symbol/AlphabetManager.java:728: nested class
org.biojava.bio.symbol.AlphabetManager. GapSymbol must be declared
abstract. It does not define void
removeChangeListener(org.biojava.utils.ChangeListener) from interface
org.biojava.utils.Changeable.<br>
private static class GapSymbol<br>
^<br>
src/org/biojava/bio/symbol/AlphabetManager.java:728: nested class
org.biojava.bio.symbol.AlphabetManager. GapSymbol must be declared
abstract. It does not define void
removeChangeListener(org.biojava.utils.ChangeListener,
org.biojava.utils.ChangeType) from interface
org.biojava.utils.Changeable.<br>
private static class GapSymbol<br>
^<br>
src/org/biojava/bio/symbol/AlphabetManager.java:728: nested class
org.biojava.bio.symbol.AlphabetManager. GapSymbol must be declared
abstract. It does not define void
addChangeListener(org.biojava.utils.ChangeListener) from interface
org.biojava.utils.Changeable.<br>
private static class GapSymbol<br>
^<br>
src/org/biojava/bio/symbol/AlphabetManager.java:728: nested class
org.biojava.bio.symbol.AlphabetManager. GapSymbol must be declared
abstract. It does not define void
addChangeListener(org.biojava.utils.ChangeListener,
org.biojava.utils.ChangeType) from interface
org.biojava.utils.Changeable.<br>
private static class GapSymbol<br>
^<br>
src/org/biojava/bio/symbol/SimpleAlphabet.java:35: class
org.biojava.bio.symbol.SimpleAlphabet must be declared abstract. It does
not define void removeChangeListener(org.biojava.utils.ChangeListener)
from interface org.biojava.utils.Changeable.<br>
public class SimpleAlphabet extends AbstractAlphabet implements
Serializable {<br>
^<br>
src/org/biojava/bio/symbol/SimpleAlphabet.java:35: class
org.biojava.bio.symbol.SimpleAlphabet must be declared abstract. It does
not define void removeChangeListener(org.biojava.utils.ChangeListener,
org.biojava.utils.ChangeType) from interface
org.biojava.utils.Changeable.<br>
public class SimpleAlphabet extends AbstractAlphabet implements
Serializable {<br>
^<br>
src/org/biojava/bio/symbol/SimpleAlphabet.java:35: class
org.biojava.bio.symbol.SimpleAlphabet must be declared abstract. It does
not define void addChangeListener(org.biojava.utils.ChangeListener) from
interface org.biojava.utils.Changeable.<br>
public class SimpleAlphabet extends AbstractAlphabet implements
Serializable {<br>
^<br>
src/org/biojava/bio/symbol/SimpleAlphabet.java:35: class
org.biojava.bio.symbol.SimpleAlphabet must be declared abstract. It does
not define void addChangeListener(org.biojava.utils.ChangeListener,
org.biojava.utils.ChangeType) from interface
org.biojava.utils.Changeable.<br>
public class SimpleAlphabet extends AbstractAlphabet implements
Serializable {<br>
^<br>
src/org/biojava/bio/symbol/SimpleAtomicSymbol.java:32: class
org.biojava.bio.symbol.SimpleAtomicSymbol must be declared abstract. It
does not define void
removeChangeListener(org.biojava.utils.ChangeListener) from interface
org.biojava.utils.Changeable.<br>
public class SimpleAtomicSymbol implements AtomicSymbol {<br>
^<br>
src/org/biojava/bio/symbol/SimpleAtomicSymbol.java:32: class
org.biojava.bio.symbol.SimpleAtomicSymbol must be declared abstract. It
does not define void
removeChangeListener(org.biojava.utils.ChangeListener,
org.biojava.utils.ChangeType) from interface
org.biojava.utils.Changeable.<br>
public class SimpleAtomicSymbol implements AtomicSymbol {<br>
^<br>
src/org/biojava/bio/symbol/SimpleAtomicSymbol.java:32: class
org.biojava.bio.symbol.SimpleAtomicSymbol must be declared abstract. It
does not define void addChangeListener(org.biojava.utils.ChangeListener)
from interface org.biojava.utils.Changeable.<br>
public class SimpleAtomicSymbol implements AtomicSymbol {<br>
^<br>
src/org/biojava/bio/symbol/SimpleAtomicSymbol.java:32: class
org.biojava.bio.symbol.SimpleAtomicSymbol must be declared abstract. It
does not define void addChangeListener(org.biojava.utils.ChangeListener,
org.biojava.utils.ChangeType) from interface
org.biojava.utils.Changeable.<br>
public class SimpleAtomicSymbol implements AtomicSymbol {<br>
^<br>
src/org/biojava/bio/symbol/SimpleAtomicSymbol.java:36: class
org.biojava.bio.symbol.SingletonAlphabet is an abstract class. It can't
be instantiated.<br>
delegate = new SimpleSymbol(token, name, new
SingletonAlphabet(this), annotation);<br>
^<br>
src/org/biojava/bio/symbol/SimpleSymbol.java:34: class
org.biojava.bio.symbol.SimpleSymbol must be declared abstract. It does
not define void removeChangeListener(org.biojava.utils.ChangeListener)
from interface org.biojava.utils.Changeable.<br>
public class SimpleSymbol implements Symbol, Serializable {<br>
^<br>
src/org/biojava/bio/symbol/SimpleSymbol.java:34: class
org.biojava.bio.symbol.SimpleSymbol must be declared abstract. It does
not define void removeChangeListener(org.biojava.utils.ChangeListener,
org.biojava.utils.ChangeType) from interface
org.biojava.utils.Changeable.<br>
public class SimpleSymbol implements Symbol, Serializable {<br>
^<br>
src/org/biojava/bio/symbol/SimpleSymbol.java:34: class
org.biojava.bio.symbol.SimpleSymbol must be declared abstract. It does
not define void addChangeListener(org.biojava.utils.ChangeListener) from
interface org.biojava.utils.Changeable.<br>
public class SimpleSymbol implements Symbol, Serializable {<br>
^<br>
src/org/biojava/bio/symbol/SimpleSymbol.java:34: class
org.biojava.bio.symbol.SimpleSymbol must be declared abstract. It does
not define void addChangeListener(org.biojava.utils.ChangeListener,
org.biojava.utils.ChangeType) from interface
org.biojava.utils.Changeable.<br>
public class SimpleSymbol implements Symbol, Serializable {<br>
^<br>
src/org/biojava/bio/symbol/SingletonAlphabet.java:35: class
org.biojava.bio.symbol.SingletonAlphabet must be declared abstract. It
does not define void
removeChangeListener(org.biojava.utils.ChangeListener) from interface
org.biojava.utils.Changeable.<br>
public class SingletonAlphabet implements FiniteAlphabet, Serializable
{<br>
^<br>
src/org/biojava/bio/symbol/SingletonAlphabet.java:35: class
org.biojava.bio.symbol.SingletonAlphabet must be declared abstract. It
does not define void
removeChangeListener(org.biojava.utils.ChangeListener,
org.biojava.utils.ChangeType) from interface
org.biojava.utils.Changeable.<br>
public class SingletonAlphabet implements FiniteAlphabet, Serializable
{<br>
^<br>
src/org/biojava/bio/symbol/SingletonAlphabet.java:35: class
org.biojava.bio.symbol.SingletonAlphabet must be declared abstract. It
does not define void addChangeListener(org.biojava.utils.ChangeListener)
from interface org.biojava.utils.Changeable.<br>
public class SingletonAlphabet implements FiniteAlphabet, Serializable
{<br>
^<br>
src/org/biojava/bio/symbol/SingletonAlphabet.java:35: class
org.biojava.bio.symbol.SingletonAlphabet must be declared abstract. It
does not define void addChangeListener(org.biojava.utils.ChangeListener,
org.biojava.utils.ChangeType) from interface
org.biojava.utils.Changeable.<br>
public class SingletonAlphabet implements FiniteAlphabet, Serializable
{<br>
^<br>
47 errors<br>
<br>
</font> </html>
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