[Biojava-l] problem running demos from the biojava-live dir ...

[sarathchandra]

hi thomas and pocock
   I have been using biojava for quite some time
now,But recently i installed red hat linux 7.1 and
added biojava.jar , xerces.jar, xml.jar,bytecode.jar
and the jakarta-regexp.jar but inspite of this when i
try to run the demos from the biojava-live directory i
am getting the followingstack trace for the programs
[sarath@localhost demos]javac seq/GCCgbk.java
[sarath@localhost demos]java  seq.GCCgbk seq/utrs.fa
 java.lang.ExceptionInIntializerError: [exception was
org.biojava.bio.bioerror: unable to initialize
AlphabetManager]
java.lang.NullpointerException
 rethrown as org.biojava.bio.BioError:unable to
initialize AlphabetManager
 at
java.lang.Throwable.FillInstanceTrace(Throwable.java:native)
at java.lang.Throwable.<init>(Throwable.java:38)
at java.lang.Error.<init>(Error.java:21)
at org.biojava.utils.NestedError.<init>(Nested
Error.java:60)
at org.biojava.bio.bioError,<init>(BioError.java:48)

     Hope this stack trace will help you to tell me
whats wrong with the running of programs is it because
the file alphabetmanager.xml in manifest directory is
missing as i found that such file exists in this
directory.. Anyway hope to hear an early reply from
you
from sarath



=====
TIME AND TIDE WAIT FOR NO MAN
KNOWLEDGE IS POWER

sarath chandra J
B.tech 3rd yr
IIT Delhi

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