[Biojava-l] GenBank parser question

Scott Markel smarkel@netgenics.com
Mon, 23 Oct 2000 10:16:38 -0700


Matthew Pocock wrote:
> Hi Scott,
> Thanks for your interest in BioJava. The problem with these REFERENCEs is a
> fatal flaw in how both EMBL and Genbank parsers handle the header
> information. They should be stooring a list of reference objects in the
> annotation bundle, rather than stooring each reference directly under the
> same key. This should be easy for you to fix - the code is open source, so
> you can make any changes to it that you want to. If you do not have time to
> sort it today, then I will try to make the fix over the weekend.

We'll get the change coded up in the next day or two.  Should we send
our proposed changes to you?


Scott Markel, Ph.D.       NetGenics, Inc.
smarkel@netgenics.com     4350 Executive Drive
Tel: 858 455 5223         Suite 260
FAX: 858 455 1388         San Diego, CA  92121