[Biojava-l] Emblparsing

Kristina Engdahl kristina.engdahl@genpat.uu.se
Tue, 05 Dec 2000 11:54:27 +0100


Hello everyone!
I have recently started to work with BioJava with mostly satisfying
results.
At the moment I'm trying to parse an Embl flatfile to get all the
features. It works fine and I get features such as repeat regions and
misc_features etc. However, I would like to be able to retrieve the
individual "exons" that are specified in the CDS feature. Like this:

FT   CDS
join(<5642..5793,10804..10976,12496..12656,14136..14266,
FT
14403..14532,16852..16987,17821..17959,18068..18122,
FT
19456..19570,23623..23753,25885..26053,29102..29240,
FT                   32621..32738,33595..33771)

Is this supported by any objects in biojava and does anyone have any
suggestions on this?
All the best,
Kicki

kristina.engdahl@genpat.uu.se