[Biojava-l] build error w/ JBuilder

Ann Loraine loraine@loraine.net
Thu, 17 Aug 2000 13:19:54 -0700 (PDT)

I just updated my copy of biojava and picked up your change.

Sorry to be a pain, but now I have another problem -- again w/
building on Windows.  Has anyone else run into this, as well?

I'm not sure about this, but it seems that the xerces and Sun xml
jars are perhaps incompatible.  (the ones from biojava Web site)

When I try to build biojava I get this error:

"cannot access class com.sun.xml.tree.ElementNode; no source found; must
be compiled, because org.w3c.dom.Element.normalize referenced by
class com.sun.xml.tree.ElementNode has changed."

Thanks for your help!



Ann E. Loraine

On Wed, 16 Aug 2000, Thomas Down wrote:

> On Sat, Aug 12, 2000 at 10:47:49AM -0700, Ann Loraine wrote:
> >
> > I'm having a bit of trouble building biojava w/ JBuilder,
> > my favorite Windows IDE.  
> Hi...
> I've done a bit of poking, and the code in EmblFormat
> and GenbankFormat is indeed illegal, at least given a strict
> reading of the inner classes spec.  I've shuffled things
> round in CVS (both on HEAD and release-1_0-branch).  This
> should solve the problem now...
> If you can confirm that the latest CVS version is working,
> I'll put up a 1.01 release in a few days which includes
> this, and also the JDK1.3 compiler errors that were reported
> a week or two back.
> Thanks,
>     Thomas.
> -- 
> One of the advantages of being disorderly is that one is
> constantly making exciting discoveries.
>                                        -- A. A. Milne