[Biojava-dev] Genbank parser question

Jose Duarte jose.duarte at rcsb.org
Wed May 31 17:30:56 UTC 2017


Welcome Philippe!


1/ Are pull requests welcome ?
>

Absolutely, we're always happy to get pull requests.


>
> 2/ I tried to use the org.biojava.nbio.core.sequence.io.GenbankReader to
> parse a genbank file, and more specifically files from the gbpat division
> (patents). The patent information is encoded almost entirely in the
> COMMENTS field. This field seems to be parsed in the GenbankParser, but is
> never propagated back by the resulting sequence object.
>
> Is this because nobody cares about the comments, or is it an omission that
> should be corrected?
>
>
>
I guess no one needed the comments until know.  It should be an easy
addition to the Sequence object. If you could provide a PR that would be
great.

Jose
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