[Biojava-dev] [biojava1.7] Modify TranslationTable; BACTERIAL: UAG => Q

[Spencer Bliven]

Ido-

You need to pass the correct Table object to the RNAToAminoAcidTranslator
constructor. A bunch of standard tables are provided with biojava-core in
iupac.txt
<https://github.com/biojava/biojava/blob/master/biojava-core/src/main/resources/org/biojava/nbio/core/sequence/iupac.txt>
and are accessable through the IUPACParser. If your amber suppressor isn't
included, you can use the IUPACTable
<http://www.biojava.org/docs/api/index.html?org/biojava/nbio/core/sequence/io/IUPACParser.IUPACTable.html>
subclass to specify your own.

-Spencer

On Thu, Mar 5, 2015 at 1:43 PM, Ido Tamir <tamir at imp.ac.at> wrote:

> Hi,
> how do I modify a translation table in biojava 1.7?
> I need to encode an amber suppressor.
>
> thank you very much,
> ido
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