[Biojava-dev] explicit support for GVF format

[Scooter Willis]

Michael

In Biojava3 we are ok on snarky comments in the GFF code! The GFF parsers
that I put together were specific to three different gene prediction
algorithms as the ontology they use was different for all three. They all
use the same underlying GFF parser code but deal with the semantics found
in the different versions. So snarky comments are applicable.

Scooter

On 4/23/12 12:55 PM, "Michael Heuer" <heuermh at gmail.com> wrote:

>Hello devs,
>
>I know we have GFF support in biojava-legacy and also in biojava3
>already; I wonder if it might be worthwhile to add explicit GVF/GFF3
>support per this specification
>
>Genome Variation Format 1.06
>http://www.sequenceontology.org/resources/gvf.html
>
>
>We may also want to remove this snarky comment from the biojava3
>GFF3Reader javadoc
>
>"The GFF moniker is applied to a variety of tab-delimited formats that
>mock the notion of a standard."
>
>:)
>
>   michael
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