[Biojava-dev] more updates...

Michael Heuer heuermh at acm.org
Sat Sep 5 02:40:48 UTC 2009


Andy Law (RI) wrote:

> Andreas,
>
> On 4 Sep 2009, at 07:53, Andreas Prlic wrote:
>
> > Hi,
> >
> > quick update: new modules:
> > biojava-biosql and
> > biojava-gui
> > biojava-das compiles, still talking off list with Jonathan about
> > details.
> >
> > mvn install works fine for me on the current svn.
>
>
> We can't get a clean check-out to build on our systems at Roslin.
>
> I have Trevor Paterson (my local maven maven) working on detailing why
> not - he'll be joining us later on the list to give us a rundown.
>
> First issue is the bytecode jar. I recognise that you have stuck it
> into a folder with a README file, but that is not a good solution. The
> folder that you have put it in is not displayed in the Project view of
> the Netbeans IDE because it is not a standard maven location.
> Obviously the best solution would be to include the bytecode source as
> a subproject and have it build or alternatively to publish the
> bytecode jar into a publicly accessible (central) maven repository.

Perhaps the biojava code that depends on bytecode.jar should be refactored
to use BCEL or some other third party bytecode generation library.

   michael




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