[Biojava-dev] more updates...

Andy Law (RI) andy.law at roslin.ed.ac.uk
Fri Sep 4 10:03:12 UTC 2009


Andreas,

On 4 Sep 2009, at 07:53, Andreas Prlic wrote:

> Hi,
>
> quick update: new modules:
> biojava-biosql and
> biojava-gui
> biojava-das compiles, still talking off list with Jonathan about  
> details.
>
> mvn install works fine for me on the current svn.


We can't get a clean check-out to build on our systems at Roslin.

I have Trevor Paterson (my local maven maven) working on detailing why  
not - he'll be joining us later on the list to give us a rundown.

First issue is the bytecode jar. I recognise that you have stuck it  
into a folder with a README file, but that is not a good solution. The  
folder that you have put it in is not displayed in the Project view of  
the Netbeans IDE because it is not a standard maven location.  
Obviously the best solution would be to include the bytecode source as  
a subproject and have it build or alternatively to publish the  
bytecode jar into a publicly accessible (central) maven repository.

Having got that in place, we then descend into jaxb hell. At that  
point I gave up and handed the baton to Trevor.


Later,

Andy
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