[Biojava-dev] Error loading Ontology with Hibernate

[Florian Mittag]

On Thursday, 6. August 2009 15:48, you wrote:
> There shouldn't be an issue with using an arbitrary value. The ranks in
> biosql are mainly to preserve the order of features etc. during
> roundtripping. It will affect sorting of ontology terms but this is
> probably not a problem.

Ok, then I will try this as a quick hack until I've found out if the NULL 
values are a bug and if it can be fixed.

Thanks for the quick answer!

- Florian


> On Aug 6, 2009 9:42 PM, "Florian Mittag" <florian.mittag at uni-tuebingen.de>
> wrote:
>
> Found the cause.
>
> After importing an ontology (Gene or Sequence Ontology) into the BioSQL
> using
> load_ontology.pl, the table "term_dbxref" has only NULL values in the rank
> column. I tried it with DB2 and MySQL, same results/error.
>
> The way I see it, this is not a problem of Hibernate. Can I set the "rank"
> to
> an arbitrary value to circumvent this problem?
>
> On Wednesday, 5. August 2009 17:41, Florian Mittag wrote: > Hi, it's me
> again ;-) > > I'm really s...