[Biojava-dev] Error loading Ontology with Hibernate

[Mark Schreiber]

There shouldn't be an issue with using an arbitrary value. The ranks in
biosql are mainly to preserve the order of features etc. during
roundtripping. It will affect sorting of ontology terms but this is probably
not a problem.

- mark

On Aug 6, 2009 9:42 PM, "Florian Mittag" <florian.mittag at uni-tuebingen.de>
wrote:

Found the cause.

After importing an ontology (Gene or Sequence Ontology) into the BioSQL
using
load_ontology.pl, the table "term_dbxref" has only NULL values in the rank
column. I tried it with DB2 and MySQL, same results/error.

The way I see it, this is not a problem of Hibernate. Can I set the "rank"
to
an arbitrary value to circumvent this problem?

On Wednesday, 5. August 2009 17:41, Florian Mittag wrote: > Hi, it's me
again ;-) > > I'm really s...