[Biojava-dev] BioJava3 Use Cases

[Keiichiro Ono]

Hi everyone.

Is support for network/graph model a part of BioJava 3?  I'm working
on a project called Cytoscape:

http://www.cytoscape.org/

and we are re-designing internal graph model now for Cytoscape 3.

http://www.cytoscape.org/cgi-bin/moin.cgi/Cytoscape_3.0
http://chianti.ucsd.edu/svn/csplugins/trunk/ucsd/mes/api/src/main/java/org/cytoscape/model/network/

I'm curious because if BioJava supports data models for
protein-protein interactions, I want to support it somehow.


Also, we are trying to support technologies including scripting
languages (http://www.cytoscape.org/cgi-bin/moin.cgi/ScriptingPlugins),
Spring Framework, pluggable rendering engine (like using Processing as
Cytoscape's rendering engine), so if we can cooperate in some topics,
it would be great.

Thanks.
Kei


-- 
Keiichiro Ono kono at ucsd.edu

Cytoscape Core Developer Team: http://www.cytoscape.org/
UCSD Bioengineering Ideker Lab: http://chianti.ucsd.edu/idekerlab/