[Biojava-dev] Problem with Phylo Code in CVS

[Richard Holland]

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I did notice it failed but wasn't sure what to do about it. What is the fix?

cheers,
Richard

Mark Schreiber wrote:
> Yes, I will omit the phylo package as it is not stable (or finished).
> 
> Also noticed that the MassCalcTest fails after the update of the new
> Mass values. Does no-one attempt to run tests before commiting?? I
> will commit a patch to the test today.
> 
> - Mark
> 
> On 6/13/07, Richard Holland <holland at ebi.ac.uk> wrote:
> JGraphT is LGPL.
> 
> I have added the current JGraphT JAR file (Java 1.5) and modified
> build.xml.
> 
> Can you temporarily omit JGraphT and the phylo packages from the 1.5
> build process?
> 
> cheers,
> Richard
> 
> Mark Schreiber wrote:
>> Hi =
> 
>> CVS is currently unbuildable because of recent commits of phylo code.
>> There are two problems.
> 
>> 1) The code has a reliance on JGraphT. This needs to be commited in
>> the appropriate place and added to the classpath etc in the ant build
>> file.
> 
>> 2) The code contains java 1.5 reliant code (generics) that won't
>> compile with the biojava standard JDK (1.4.2). This is not really an
>> issue as I am about to do a final BioJava 1.5 build after which we
>> switch to JDK1.5 (or maybe even 1.6).
> 
>> Can someone checkin JGraphT and make the appropriate changes to the
>> build XML? Please also ensure the licenses are acceptable and properly
>> replicated.
> 
>> - Mark
>> _______________________________________________
>> biojava-dev mailing list
>> biojava-dev at lists.open-bio.org
>> http://lists.open-bio.org/mailman/listinfo/biojava-dev
> 
>>

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