[Biojava-dev] Problem with Phylo Code in CVS

[Mark Schreiber]

Yes, I will omit the phylo package as it is not stable (or finished).

Also noticed that the MassCalcTest fails after the update of the new
Mass values. Does no-one attempt to run tests before commiting?? I
will commit a patch to the test today.

- Mark

On 6/13/07, Richard Holland <holland at ebi.ac.uk> wrote:
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> JGraphT is LGPL.
>
> I have added the current JGraphT JAR file (Java 1.5) and modified build.xml.
>
> Can you temporarily omit JGraphT and the phylo packages from the 1.5
> build process?
>
> cheers,
> Richard
>
> Mark Schreiber wrote:
> > Hi =
> >
> > CVS is currently unbuildable because of recent commits of phylo code.
> > There are two problems.
> >
> > 1) The code has a reliance on JGraphT. This needs to be commited in
> > the appropriate place and added to the classpath etc in the ant build
> > file.
> >
> > 2) The code contains java 1.5 reliant code (generics) that won't
> > compile with the biojava standard JDK (1.4.2). This is not really an
> > issue as I am about to do a final BioJava 1.5 build after which we
> > switch to JDK1.5 (or maybe even 1.6).
> >
> > Can someone checkin JGraphT and make the appropriate changes to the
> > build XML? Please also ensure the licenses are acceptable and properly
> > replicated.
> >
> > - Mark
> > _______________________________________________
> > biojava-dev mailing list
> > biojava-dev at lists.open-bio.org
> > http://lists.open-bio.org/mailman/listinfo/biojava-dev
> >
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