[Biojava-dev] Error in using GenBankSequenceDB

[Shuvankar Mukherjee]

Hi,
While using org.biojava.bio.seq.db.GenbankSequenceDB
for on-line download of sequences following functions are giving errors:

  getSequence(String s);

and

 getSequences(java.util.Set);

The URL s are getting properly constructed, but since getSequence() displays
the constructed URL (it is tested on the IE and giving complete outout).
It is unable to parse the data, and giving a parsing exception, after quite
a long time...

getSequences(Set) is giving multiple lines of parsing exception, and
ultimately throws "Out Of Memory" error.

Could any one comment / suggest a way out for online sequence fetching.

Shuvankar Mukherjee