[Biojava-dev] Formatting error in EMBL output?

[David Huen]

I wrote a little utility that inputs FASTA files into Sequence objects and
writes them back out as EMBL files.

There appears to be some bug in writing out the files which start like
this:-

description_line   Contig923_Contig910
XX
XX
SQ   Sequence 188922 BP; 44621 A; 45691 C; 45321 G; 44830 T; 8459 other;
     gcttctccag agcctttgct ttctgtgccg tagccttgga atctttggca tcgaccttct 60


It looks as if it is handling the annotation bundle contents incorrectly.

At any rate, Artemis doesn't approve of this as input ;-)

Regards,
David Huen